Module bioiain.utilities.exceptions

Classes

class ALEPHError (*args, **kwargs)

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class ALEPHError(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

class AlreadyFractional (*args, **kwargs)

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class AlreadyFractional(FractionalConversionError):
    pass

Common base class for all non-exit exceptions.

Ancestors

• FractionalConversionError
• builtins.Exception
• builtins.BaseException

class AlreadyLoaded (*args, **kwargs)

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class AlreadyLoaded(StructureLoadException):
    pass

Common base class for all non-exit exceptions.

Ancestors

• StructureLoadException
• builtins.Exception
• builtins.BaseException

class AlreadyOrthogonal (*args, **kwargs)

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class AlreadyOrthogonal(FractionalConversionError):
    pass

Common base class for all non-exit exceptions.

Ancestors

• FractionalConversionError
• builtins.Exception
• builtins.BaseException

class CCP4Error (*args, **kwargs)

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class CCP4Error(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

Subclasses

• CCP4NotEnabled
• PISAError

class CCP4NotEnabled (*args, **kwargs)

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class CCP4NotEnabled(CCP4Error):
    pass

Common base class for all non-exit exceptions.

Ancestors

• CCP4Error
• builtins.Exception
• builtins.BaseException

class CVMatrixError (*args, **kwargs)

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class CVMatrixError(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

Subclasses

• NoNeighboursFound

class ClusteringError (*args, **kwargs)

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class ClusteringError(MMSEQS2Error):
    pass

Common base class for all non-exit exceptions.

Ancestors

• MMSEQS2Error
• builtins.Exception
• builtins.BaseException

class CrystalError (*args, **kwargs)

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class CrystalError(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

Subclasses

• MissingCrystalInfo

class DatabaseError (*args, **kwargs)

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class DatabaseError(MMSEQS2Error):
    pass

Common base class for all non-exit exceptions.

Ancestors

• MMSEQS2Error
• builtins.Exception
• builtins.BaseException

class DeletedIndex (*args, next_n=None, **kwargs)

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class DeletedIndex(Exception):
    def __init__(self, *args, next_n=None, **kwargs):
        super().__init__(*args, **kwargs)
        self.next_n = next_n

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

class DownloadError (*args, **kwargs)

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class DownloadError(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

class EmbeddingGenerationError (*args, **kwargs)

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class EmbeddingGenerationError(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

Subclasses

• NoEmbeddingForThisProtein
• NoEmbeddingForThisResidue

class EmptyTensor (*args, **kwargs)

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class EmptyTensor(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

class FoldseekError (*args, **kwargs)

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class FoldseekError(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

class FractionalConversionError (*args, **kwargs)

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class FractionalConversionError(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

Subclasses

• AlreadyFractional
• AlreadyOrthogonal

class MMCIFError (*args, **kwargs)

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class MMCIFError(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

Subclasses

• MMCIFTypeError

class MMCIFTypeError (*args, **kwargs)

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class MMCIFTypeError(MMCIFError):
    pass

Common base class for all non-exit exceptions.

Ancestors

• MMCIFError
• builtins.Exception
• builtins.BaseException

class MMSEQS2Error (*args, **kwargs)

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class MMSEQS2Error(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

Subclasses

• ClusteringError
• DatabaseError

class MissingCrystalInfo (*args, **kwargs)

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class MissingCrystalInfo(CrystalError):
    pass

Common base class for all non-exit exceptions.

Ancestors

• CrystalError
• builtins.Exception
• builtins.BaseException

class MissingProgram (*args, **kwargs)

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class MissingProgram(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

class MisslabellingException (*args, **kwargs)

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class MisslabellingException(SequenceMissmatchException):
    pass

Common base class for all non-exit exceptions.

Ancestors

• SequenceMissmatchException
• builtins.Exception
• builtins.BaseException

class ModelNotFound (*args, **kwargs)

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class ModelNotFound(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

class NoBackbone (*args, **kwargs)

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class NoBackbone(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

class NoCaFound (*args, **kwargs)

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class NoCaFound(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

class NoEmbeddingForThisProtein (*args, **kwargs)

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class NoEmbeddingForThisProtein(EmbeddingGenerationError):
    pass

Common base class for all non-exit exceptions.

Ancestors

• EmbeddingGenerationError
• builtins.Exception
• builtins.BaseException

class NoEmbeddingForThisResidue (*args, **kwargs)

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class NoEmbeddingForThisResidue(EmbeddingGenerationError):
    pass

Common base class for all non-exit exceptions.

Ancestors

• EmbeddingGenerationError
• builtins.Exception
• builtins.BaseException

class NoMatchingClass (*args, **kwargs)

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class NoMatchingClass(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

class NoNeighboursFound (*args, **kwargs)

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class NoNeighboursFound(CVMatrixError):
    pass

Common base class for all non-exit exceptions.

Ancestors

• CVMatrixError
• builtins.Exception
• builtins.BaseException

class NotAGoodIdea (*args, **kwargs)

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class NotAGoodIdea(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

class PISAError (*args, **kwargs)

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class PISAError(CCP4Error):
    pass

Common base class for all non-exit exceptions.

Ancestors

• CCP4Error
• builtins.Exception
• builtins.BaseException

class PLINDERError (*args, **kwargs)

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class PLINDERError(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

Subclasses

• PLINDERSystemNotLoaded

class PLINDERSystemNotLoaded (*args, **kwargs)

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class PLINDERSystemNotLoaded(PLINDERError):
    pass

Common base class for all non-exit exceptions.

Ancestors

• PLINDERError
• builtins.Exception
• builtins.BaseException

class SequenceMissmatchException (*args, **kwargs)

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class SequenceMissmatchException(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

Subclasses

• MisslabellingException

class StructureLoadException (*args, **kwargs)

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class StructureLoadException(Exception):
    pass

Common base class for all non-exit exceptions.

Ancestors

• builtins.Exception
• builtins.BaseException

Subclasses

• AlreadyLoaded
• StructureRecoverException
• UnknownFormat

class StructureNotFound (*args, **kwargs)

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class StructureNotFound(StructureRecoverException):
    pass

Common base class for all non-exit exceptions.

Ancestors

• StructureRecoverException
• StructureLoadException
• builtins.Exception
• builtins.BaseException

class StructureRecoverException (*args, **kwargs)

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class StructureRecoverException(StructureLoadException):
    pass

Common base class for all non-exit exceptions.

Ancestors

• StructureLoadException
• builtins.Exception
• builtins.BaseException

Subclasses

• StructureNotFound

class UnknownFormat (*args, **kwargs)

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class UnknownFormat(StructureLoadException):
    pass

Common base class for all non-exit exceptions.

Ancestors

• StructureLoadException
• builtins.Exception
• builtins.BaseException